Chapter II: The Cell and Protoplasm (2)

Later the experiment was made of depriving cells of their nucleii, and it still further emphasized the importance of the nucleus. Among unicellular animals are some which are large enough for direct manipulation, and it is found that if these cells are cut into pieces the different pieces will behave very differently in accordance with whether or not they have within them a piece of the nucleus. All the pieces are capable of carrying on their life activities for a while. The pieces of the cell which contain the nucleus of the original cell, or even a part of it, are capable of carrying on all its life activities perfectly well. In Fig. 24 is shown such a cell cut into three pieces, each of which contains a piece of the nucleus. Each carries on its life activities, feeds, grows and multiplies perfectly well, the life processes seeming to continue as if nothing had happened. Quite different is it with fragments which contain none of the nucleus (Fig. 25). These fragments (1 and 3), even though they may be comparatively large masses of protoplasm, are incapable of carrying on the functions of their life continuously. For a while they continue to move around and apparently act like the other fragments, but after a little their life ceases. They are incapable of assimilating food and incapable of reproduction, and hence their life cannot continue very long. Facts like these demonstrate conclusively the vital importance of the nucleus in cell activity, and show us that the cell, with its power of continued life, must be regarded as a combination of protoplasm with its nucleus, and cannot exist without it. It is not protoplasm, but cell substance, plus cell nucleus, which forms the simplest basis of life.

As more careful study of protoplasm was made it soon became evident that there is a very decided difference between the nucleus and the protoplasm. The old statement that the nucleus is simply a bit of dense protoplasm is not true. In its chemical and physical composition as well as in its activities the nucleus shows itself to be entirely different from the protoplasm. It contains certain definite bodies not found in the cell substance, and it goes through a series of activities which are entirely unrepresented in the surrounding protoplasm. It is something entirely distinct, and its relations to the life of the cell are unique and marvelous. These various facts led to a period in the discussion of biological topics which may not inappropriately be called the Reign of the Nucleus. Let us, therefore, see what this structure is which has demanded so much attention in the last twenty years.

(b) _Structure of the Nucleus_.--At first the nucleus appears to be very much like the cell substance. Like the latter, it is made of fibres, which form a reticulum (Fig. 23), and these fibres, like those of protoplasm, have microsomes in intimate relation with them and hold a clear liquid in their meshes. The meshes of the network are usually rather closer than in the outer cell substance, but their general character appears to be the same. But a more close study of the nucleus discloses vast differences. In the first place, the nucleus is usually separated from the cell substance by a membrane (Fig. 23, _c_). This membrane is almost always present, but it may disappear, and usually does disappear, when the nucleus begins to divide. Within the nucleus we find commonly one or two smaller bodies, the nucleoli (Fig. 23, _f_). They appear to be distinct vital parts of the nucleus, and thus different from certain other solid bodies which are simply excreted material, and hence lifeless. Further, we find that the reticulum within the nucleus is made up of two very different parts. One portion is apparently identical with the reticulum of the cell substance (Fig. 23, _d_). This forms an extremely delicate network, whose fibres have chemical relations similar to those of the cell substance. Indeed, sometimes, the fibres of the nucleus may be seen to pass directly into those of the network of the cell substance, and hence they are in all probability identical. This material is called _linin_, by which name we shall hereafter refer to it. There is, however, in the nucleus another material which forms either threads, or a network, or a mass of granules, which is very different from the linin, and has entirely different properties. This network has the power of absorbing certain kinds of stains very actively, and is consequently deeply stained when treated as the microscopist commonly prepares his specimens. For this reason it has been named _chromatin_ (Fig, 23, _e_), although in more recent times other names have been given to it. Of all parts of the cell this chromatin is the most remarkable. It appears in great variety in different cells, but it always has remarkable physiological properties, as will be noticed presently. All things considered, this chromatin is probably the most remarkable body connected with organic life.

The nucleii of different animals and plants all show essentially the characteristics just described. They all contain a liquid, a linin network, and a chromatin thread or network, but they differ most remarkably in details, so that the variety among the nucleii is almost endless (Fig. 26). They differ first in their size relative to the size of the cell; sometimes--especially in young cells--the nucleus being very large, while in other cases the nucleus is very small and the protoplasmic contents of the cell very large; finally, in cells which have lost their activity the nucleus may almost or entirely disappear. They differ, secondly, in shape. The typical form appears to be spherical or nearly so; but from this typical form they may vary, becoming irregular or elongated. They are sometimes drawn out into long masses looking like a string of beads (Fig. 24), or, again, resembling minute coiled worms (Fig. 21), while in still other cells they may be branching like the twigs of a tree. The form and shape of the chromatin thread differs widely. Sometimes this appears to be mere reticulum (Fig. 23); at others, a short thread which is somewhat twisted or coiled (Fig. 26); while in other cells the chromatin thread is an extremely long, very much twisted convolute thread so complexly woven into a tangle as to give the appearance of a minute network. The nucleii differ also in the number of nucleoli they contain as well as in other less important particulars. Fig. 26 will give a little notion of the variety to be found among different nucleii; but although they thus do vary most remarkably in shape in the essential parts of their structure they are alike.

==Centrosome.==--Before noticing the activities of the nucleus it will be necessary to mention a third part of the cell. Within the last few years there has been found to be present in most cells an organ which has been called the _centrosome._ This body is shown at Fig. 23, _g_. It is found in the cell substance just outside the nucleus, and commonly appears as an extremely minute rounded dot, so minute that no internal structure has been discerned. It may be no larger than the minute granules or microsomes in the cell, and until recently it entirely escaped the notice of microscopists. It has now, however, been clearly demonstrated as an active part of the cell and entirely distinct from the ordinary microsomes. It stains differently, and, as we shall soon see, it appears to be in most intimate connection with the center of cell life. In the activities which characterize cell life this centrosome appears to lead the way. From it radiate the forces which control cell activity, and hence this centrosome is sometimes called the dynamic center of the cell. This leads us to the study of cell activity, which discloses to us some of the most extraordinary phenomena which have come to the knowledge of science.

==Function of the Nucleus.==--To understand why it is that the nucleus has taken such a prominent position in modern biological discussion it will be only necessary to notice some of the activities of the cell. Of the four fundamental vital properties of cell life the one which has been most studied and in regard to which most is known is reproduction. This knowledge appears chiefly under two heads, viz., _cell division_ and the _fertilization of the egg_. Every animal and plant begins its life as a simple cell, and the growth of the cell into the adult is simply the division of the original cell into parts accompanied by a differentiation of the parts. The fundamental phenomena of growth and reproduction is thus cell division, and if we can comprehend this process in these simple cells we shall certainly have taken a great step toward the explanation of the mechanics of life. During the last ten years this cell division has been most thoroughly studied, and we have a pretty good knowledge of it so far as its microscopical features are concerned. The following description will outline the general facts of such cell division, and will apply with considerable accuracy to all cases of cell division, although the details may differ not a little.

==Cell Division or Karyokinesis.==--We will begin with a cell in what is called the resting stage, shown at Fig. 23. Such a cell has a nucleus, with its chromatin, its membrane, and linin, as already described. Outside the nucleus is the centrosome, or, more commonly, two of them lying close together. If there is only one it soon divides into two, and if it has already two, this is because a single centrosome which the cell originally possessed has already divided into two, as we shall presently see. This cell, in short, is precisely like the typical cell which we have described, except in the possession of two centrosomes. The first indication of the cell division is shown by the chromatin fibres. During the resting stage this chromatin material may have the form of a thread, or may form a network of fibres (see Fig. 27). But whatever be its form during the resting stage, it assumes the form of a thread as the cell prepares for division. Almost at once this thread breaks into a number of pieces known as _chromosomes_ (Fig. 28). It is an extremely important fact that the number of these chromosomes in the ordinary cells of any animal or plant is always the same. In other words, in all the cells of the body of animal or plant the chromatin material in the nucleus breaks into the same number of short threads at the time that the cell is preparing to divide. The number is the same for all animals of the same species, and is never departed from. For example, the number in the ox is always sixteen, while the number in the lily is always twenty-four. During this process of the formation of the chromosomes the nucleoli disappear, sometimes being absorbed apparently in the chromosomes, and sometimes being ejected into the cell body, where they disappear. Whether they have anything to do with further changes is not yet known.

The next step in the process of division appears in the region of the centrosomes. Each of the two centrosomes appears to send out from itself delicate radiating fibres into the surrounding cell substance (Fig. 28). Whether these actually arise from the centrosome or are simply a rearrangement of the fibres in the cell substance is not clear, but at all events the centrosome becomes surrounded by a mass of radiating fibres which give it a starlike appearance, or, more commonly, the appearance of a double star, since there are two centrosomes close together (Fig. 28). These radiating fibres, whether arising from the centrosomes or not, certainly all centre in these bodies, a fact which indicates that the centrosomes contain the forces which regulate their appearance. Between the two stars or asters a set of fibres can be seen running from one to the other (Fig. 29). These two asters and the centrosomes within them have been spoken of as the dynamic centre of the cell since they appear to control the forces which lead to cell division. In all the changes which follow these asters lead the way. The two asters, with their centrosomes, now move away from each other, always connected by the spindle fibres, and finally come to lie on opposite sides of the nucleus (Figs. 29, 30). When they reach this position they are still surrounded by the radiating fibres, and connected by the spindle fibres. Meantime the membrane around the nucleus has disappeared, and thus the spindle fibres readily penetrate into the nuclear substance (Fig. 30).

During this time the chromosomes have been changing their position. Whether this change in position is due to forces within themselves, or whether they are moved around passively by forces residing in the cell substances, or whether, which is the most probable, they are pulled or pushed around by the spindle fibres which are forcing their way into the nucleus, is not positively known; nor is it, for our purposes, of special importance. At all events, the result is that when the asters have assumed their position at opposite poles of the nucleus the chromosomes are arranged in a plane passing through the middle of the nucleus at equal distances from each aster. It seems certain that they are pulled or pushed into this position by forces radiating from the centrosomes. Fig. 30 shows this central arrangement of the chromosomes, forming what is called the _equatorial plate_.

The next step is the most significant of all. It consists in the splitting of each chromosome into two equal halves. The threads _do not divide in their middle but split lengthwise_, so that there are formed two halves identical in every respect. In this way are produced twice the original number of chromosomes, but all in pairs. The period at which this splitting of the chromosomes occurs is not the same in all cells. It may occur, as described, at about the time the asters have reached the opposite poles of the nucleus, and an equatorial plate is formed. It is not infrequent, however, for it to occur at a period considerably earlier, so that the chromosomes are already divided when they are brought into the equatorial plate.

At some period or other in the cell division this splitting of the chromosomes takes place. The significance of the splitting is especially noteworthy. We shall soon find reason for believing that the chromosomes contain all the hereditary traits which the cell hands down from generation to generation, and indeed that the chromosomes of the egg contain all the traits which the parent hands down to the child. Now, if this chromatin thread consists of a series of units, each representing certain hereditary characters, then it is plain that the division of the thread by splitting will give rise to a double series of threads, each of which has identical characters. Should the division occur _across_ the thread the two halves would be unlike, but taking place as it does by a _longitudinal splitting_ each unit in the thread simply divides in half, and thus the resulting half threads each contain the same number of similar units as the other and the same as possessed by the original undivided chromosome. This sort of splitting thus doubles the number of chromosomes, but produces no differentiation of material.

The next step in the cell division consists in the separation of the two halves of the chromosomes. Each half of each chromosome separates from its fellow, and moves to the opposite end of the nucleus toward the two centrosomes (Fig. 31). Whether they are pulled apart or pushed apart by the spindle fibres is not certain, although it is apparently sure that these fibres from the centrosomes are engaged in the matter. Certain it is that some force exerted from the two centrosomes acts upon the chromosomes, and forces the two halves of each one to opposite ends of the nucleus, where they now collect and form two _new nucleii_, with evidently exactly the same number of chromosomes as the original, and with characters identical to each other and to the original (Fig. 32).

The rest of the cell division now follows rapidly. A partition grows in through the cell body dividing it into two parts (Fig. 32), the division passing through the middle of the spindle. In this division, in some cases at least, the spindle fibres bear a part--a fact which again points to the importance of the centrosomes and the forces which radiate from them. Now the chromosomes in each daughter nucleus unite to form a single thread, or may diffuse through the nucleus to form a network, as in Fig. 32. They now become surrounded by a membrane, so that the new nucleus appears exactly like the original one. The spindle fibres disappear, and the astral fibres may either disappear or remain visible. The centrosome may apparently in some cases disappear, but more commonly remains beside the daughter nucleii, or it may move into the nucleus. Eventually it divides into two, the division commonly occurring at once (Fig. 32), but sometimes not until the next cell division is about to begin. Thus the final result shows two cells each with a nucleus and two centrosomes, and this is exactly the same sort of structure with which the process began. (_See Frontispiece_.)

Viewed as a whole, we may make the following general summary of this process. The essential object of this complicated phenomena of _karyokinesis_ is to divide the chromatin into equivalent halves, so that the cells resulting from the cell division shall contain an exactly equivalent chromatin content. For this purpose the chromatic elements collect into threads and split lengthwise. The centrosome, with its fibres, brings about the separation of these two halves. Plainly, we must conclude that the chromatin material is something of extraordinary importance to the cell, and the centrosome is a bit of machinery for controlling its division and thus regulating cell division.

==Fertilization of the Egg.==--This description of cell division will certainly give some idea of the complexity of cell life, but a more marvelous series of changes still takes place during the time when the egg is preparing for development. Inasmuch as this process still further illustrates the nature of the cell, and has further a most intimate bearing upon the fundamental problem of heredity, it will be necessary for us to consider it here briefly.

The sexual reproduction of the many-celled animals is always essentially alike. A single one of the body cells is set apart to start the next generation, and this cell, after separating from the body of the animal or plant which produced it, begins to divide, as already shown in Fig. 8, and the many cells which arise from it eventually form the new individual This reproductive cell is the egg. But before its division can begin there occurs in all cases of sexual reproduction a process called fertilization, the essential feature of which is the union of this cell with another commonly from a different individual. While the phenomenon is subject to considerable difference in details, it is essentially as follows:

The female reproductive cell is called the egg, and it is this cell which divides to form the next generation. Such a cell is shown in Fig. 33. Like other cells it has a cell wall, a cell substance with its linin and fluid portions, a nucleus surrounded by a membrane and containing a reticulum, a nucleolus and chromatic material, and lastly, a centrosome. Now such an egg is a complete cell, but it is not able to begin the process of division which shall give rise to a new individual until it has united with another cell of quite a different sort and commonly derived from a different individual called the male. Why the egg cell is unable to develop without such union with male cell does not concern us here, but its purpose will be evident as the description proceeds. The egg cell as it comes from the ovary of the female individual is, however, not yet ready for union with the male cell, but must first go through a series of somewhat remarkable changes constituting what is called _maturation_ of the egg. This phenomenon has such an intimate relation to all problems connected with the cell, that it must be described somewhat in detail. There are considerable differences in the details of the process as it occurs in various animals, but they all agree in the fundamental points. The following is a general description of the process derived from the study of a large variety of animals and plants.

In the cells of the body of the animal to which this description applies there are four chromosomes This is true of all the cells of the animal except the sexual cells. The eggs arise from the other cells of the body, but during their growth the chromatin splits in such a way that the egg contains double the number of chromosomes, i.e., eight (Fig. 34). If this egg should now unite with the other reproductive cell from the male, the resulting fertilized egg would plainly contain a number of chromosomes larger than that normal for this species of animal. As a result the next generation would have a larger number of chromosomes in each cell than the last generation, since the division of the egg in development is like that already described and always results in producing new cells with the same number of chromosomes as the starting cell. Hence, if the number of chromosomes in the next generation is to be kept equal to that in the last generation, this egg cell must get rid of a part of its chromatin material. This is done by a process shown in Fig. 35. The centrosome divides as in ordinary cell division (Fig. 35), and after rotating on its axis it approaches the surface of the egg (Figs. 36 and 37). The egg now divides (Fig. 38), but the division is of a peculiar kind. Although the chromosomes divide equally the egg itself divides into two very unequal parts, one part still appearing as the egg and the other as a minute protuberance called the polar cell (_pc'_ in Fig. 38). The chromosomes do not split as they do in the cell division already described, but each of these two cells, the egg and the polar body, receives four chromosomes (Fig. 38). The result is that the egg has now the normal number of chromosomes for the ordinary cells of the animal in question. But this is still too many, for the egg is soon to unite with the male cell; and this male cell, as we shall see, is to bring in its own quota of chromosomes. Hence the egg must get rid of still more of its chromatin material. Consequently, the first division is followed by a second (Fig. 39), in which there is again produced a large and a small cell. This division, like the first, occurs without any splitting of the chromosomes, one half of the remaining chromosomes being ejected in this new cell, the second polar cell (_pc"_) leaving the larger cell, the egg, with just one half the number of chromosomes normal for the cells of the animal in question. Meantime the first pole cell has also divided, so that we have now, as shown in Fig. 40, four cells, three small and one large, but each containing one half the normal number of chromosomes. In the example figured, four is the normal number for the cells of the animal. The egg at the beginning of the process contained eight, but has now been reduced to two. In the further history of the egg the smaller cells, called _polar cells_, take no part, since they soon disappear and have nothing to do with the animal which is to result from the further division of the egg. This process of the formation of the polar cells is thus simply a device for getting rid of some of the chromatin material in the egg cell, so that it may unite with a second cell without doubling the normal number of chromosomes.

Previously to this process the other sexual cell, the _spermatozoon_, or male reproductive cell, has been undergoing a somewhat similar process. This is also a true cell (Fig. 34, _mc_), although it is of a decidedly smaller size than the egg and of a very different shape. It contains cell substance, a nucleus with chromosomes, and a centrosome, the number of chromosomes, as shown later, being however only half that normal for the ordinary cells of the animals. The study of the development of the spermatozoon shows that it has come from cells which contained the normal number of four, but that this number has been reduced to one half by a process which is equivalent to that which we have just noticed in the egg. Thus it comes about that each of the sexual elements, the egg and the spermatozoon, now contains one half the normal number of chromosomes.

Now by some mechanical means these two reproductive cells are brought in contact with each other, shown in Fig. 34, and as soon as they are brought into each other's vicinity the male cell buries its head in the body of the egg. The tail by which it has been moving is cast off, and the head containing the chromosomes and the centrosome enters the egg, forming what is called the male pronucleus (Figs. 35-38, _mn_). This entrance of the male cell occurs either before the formation of the polar cells of the egg or afterward. If, however, it takes place before, the male pronucleus simply remains dormant in the egg while the polar cells are being protruded, and not until after that process is concluded does it begin again to show signs of activity which result in the cell union.

The further steps in this process appear to be controlled by the centrosome, although it is not quite certain whence this centrosome is derived. Originally, as we have seen, the egg contained a centrosome, and the male cell has also brought a second into the egg (Fig. 35, _ce_). In some cases, and this is true for the worm we are describing, it is certain that the egg centrosome disappears while that of the spermatozoon is retained alone to direct the further activities (Fig. 41). Possibly this may be the case in all eggs, but it is not sure. It is a matter of some little interest to have this settled, for if it should prove true, then it would evidently follow that the machinery for cell division, in the case of sexual reproduction, is derived from the father, although the bulk of the cell comes from the mother, while the chromosomes come from both parents.

In the cases where the process has been most carefully studied, the further changes are as follows: The head of the spermatozoon, after entrance into the egg, lies dormant until the egg has thrown off its polar cells, and thus gotten rid of part of its chromosomes. Close to it lies its centrosomes (Fig. 35, _ce_), and there is thus formed what is known as the _male pronucleus_ (Fig. 35-40, _mn_). The remains of the egg nucleus, after having discharged the polar cells, form the _female nucleus_ (Fig. 40, _fn_). The chromatin material, in both the male and female pronucleus, soon breaks up into a network in which it is no longer possible to see that each contains two chromosomes (Fig. 41). Now the centrosome, which is beside the male pronucleus, shows signs of activity. It becomes surrounded by prominent rays to form an aster (Fig. 41, _ce_), and then it begins to move toward the female pronucleus, apparently dragging the male pronucleus after it. In this way the centrosome approaches the female pronucleus, and thus finally the two nucleii are brought into close proximity. Meantime the chromatin material in each has once more broken up into short threads or chromosomes, and once more we find that each of the nucleii contains two of these bodies (Fig. 42). In the subsequent figures the chromosomes of the male nucleus are lightly shaded, while those of the female are black in order to distinguish them. As these two nucleii finally come together their membranes disappear, and the chromatic material comes to lie freely in the egg, the male and female chromosomes, side by side, but distinct forming the _segmentation nucleus_. The egg plainly now contains once more the number of chromosomes normal for the cells of the animal, but half of them have been derived from each parent. It is very suggestive to find further that the chromosomes in this _fertilized egg_ do not fuse with each other, but remain quite distinct, so that it can be seen that the new nucleus contains chromosomes derived from each parent (Fig. 42). Nor does there appear to be, in the future history of this egg, any actual fusion of the chromatic material, the male and female chromosomes perhaps always remaining distinct.

While this mixture of chromosomes has been taking place the centrosome has divided into two parts, each of which becomes surrounded by an aster and travels to opposite ends of the nucleus (Fig. 42). There now follows a division of the nucleus exactly similar to that which occurs in the normal cell division already described in Figs. 28-34. Each of the chromosomes splits lengthwise (Fig. 43), and one half of each then travels toward each centrosome to form a new nucleus (Fig. 44). Since each of the four chromosomes thus splits, it follows that each of the two daughter nucleii will, of course, contain four chromosomes; two of which have been derived from the male and two from the female parent. From now the divisions of the egg follow rapidly by the normal process of cell division until from this one egg cell there are eventually derived hundreds of thousands of cells which are gradually moulded into the adult. All of these cells will, of course, contain four chromosomes; and, what is more important, half of the chromosomes will have been derived directly from the male and half from the female parent. Even into adult life, therefore, the cells of the animal probably contain chromatin derived by direct descent from each of its parents.

==The Significance of Fertilization.==--From this process of fertilization a number of conclusions, highly important for our purpose, can be drawn. In the first place, it is evident that the chromosomes form the part of the cell which contain the hereditary traits handed down from parent to child. This follows from the fact that the chromosomes are the only part of the cell which, in the fertilized egg, is derived from both parents. Now the offspring can certainly inherit from each parent, and hence the hereditary traits must be associated with some part of the cell which is derived from both. But the egg substance is derived from the mother alone; the centrosome, at least in some cases and perhaps in all, is derived only from the father, while the chromosomes are derived from _both_ parents. Hence it follows that the hereditary traits must be particularly associated with the chromosomes.

With this understanding we can, at least, in part understand the purpose of fertilization. As we shall see later, it is very necessary in the building of the living machine for each individual to inherit characters from more than one individual. This is necessary to produce the numerous variations which contribute to the construction of the machine. For this purpose there has been developed the process of sexual union of reproductive cells, which introduces into the offspring chromatic material from _two_ parents. But if the two reproductive cells should unite at once the number of chromosomes would be doubled in each generation, and hence be constantly increasing. To prevent this the polar cells are cast out, which reduces the amount of chromatic material. The union of the two pronucleii is plainly to produce a nucleus which shall contain chromosomes, and hence hereditary traits from each parent and the subsequent splitting of these chromosomes and the separation of the two halves into daughter nucleii insures that all the nucleii, and hence all cells of the adult, shall possess hereditary traits derived from both parents. Thus it comes that, even in the adult, every body cell is made up of chromosomes from each parent, and may hence inherit characters from each.

The cell of an animal thus consists of three somewhat distinct but active parts--the cell substance, the chromosomes, and the centrosome. Of these the cell substance appears to be handed down from the mother; the centrosome comes, at least in some cases, from the father, and the chromosomes from both parents. It is not yet certain, however, whether the centrosome is a constant part of the cell. In some cells it cannot yet be found, and there are some reasons for believing that it may be formed out of other parts of the cell. The nucleus is always a direct descendant from the nucleus of pre-existing cells, so that there is an absolute continuity of descent between the nucleii of the cells of an individual and those of its antecedents back for numberless generations. It is not certain that there is any such continuity of descent in the case of the centrosomes; for, while in the process of fertilization the centrosome is handed down from parent to child, there are some reasons for believing that it may disappear in subsequent cells, and later be redeveloped out of other parts. The only part of the cell in which complete continuity from parent to child is demonstrated, is the nucleus and particularly the chromosomes. All of these facts simply emphasize the importance of the chromosomes, and tell us that these bodies must be regarded as containing the most important features of the cell which constitute its individuality.

==What is Protoplasm?==--Enough has now been given of disclosures of the modern microscope to show that our old friend Protoplasm has assumed an entirely new guise, if indeed it has not disappeared altogether. These simplest life processes are so marvelous and involve the action of such an intricate mass of machinery that we can no longer retain our earlier notion of protoplasm as the physical basis of life. There can be no life without the properties of assimilation, growth, and reproduction; and, so far as we know, these properties are found only in that combination of bodies which we call the cell, with its mixture of harmoniously acting parts. _Life, at least the life of a cell, is then not the property of a chemical compound protoplasm, but is the result of the activities of a machine._ Indeed, we are now at a loss to know how we can retain the term protoplasm. As originally used it meant the contents of the cell, and the significance in the term was in the conception of protoplasm as a somewhat homogeneous chemical compound uniform in all types of life. But we now see that this cell contains not a single substance, but a large number, including solids, jelly masses, and liquids, each of which has its own chemical composition. The number of chemical compounds existing in the material formerly called protoplasm no one knows, but we do know that they are many, and that the different substances are combined to form a physical structure. Which of these various bodies shall we continue to call protoplasm? Shall it be the linin, or the liquids, or the microsomes, or the chromatin threads, or the centrosomes? Which of these is the actual physical basis of life? From the description of cell life which we have given, it will be evident that no one of them is a material upon which our chemical biologists can longer found a chemical theory of life. That chemical theory of life, as we have seen, was founded upon the conception that the primitive life substance is a definite chemical compound. No such compound has been discovered, and these disclosures of the microscope of the last few years have been such as to lead us to abandon hope of ever discovering such a compound. It is apparently impossible to reduce life to any simpler basis than this combination of bodies which make up what was formerly called protoplasm. The term protoplasm is still in use with different meanings as used by different writers. Sometimes it is used to refer to the entire contents of the cell; sometimes to the cell substance only outside the nucleus. Plainly, it is not the protoplasm of earlier years.

With this conclusion one of our fundamental questions has been answered. We found in our first chapter that the general activities of animals and plants are easily reduced to the action of a machine, provided we had the fundamental vital powers residing in the parts of that machine. We then asked whether these fundamental properties were themselves those of a chemical compound or whether they were to be reduced to the action of still smaller machines. The first answer which biologists gave to this question was that assimilation, growth, and reproduction were the simple properties of a complex chemical compound. This answer was certainly incorrect. Life activities are exhibited by no chemical compound, but, so far as we know, only by the machine called the cell. Thus it is that we are again reduced to the problem of understanding the action of a machine. It may be well to pause here a moment to notice that this position very greatly increases the difficulties in the way of a solution of the life problem. If the physical basis of life had proved to be a chemical compound, the problem of its origin would have been a chemical one. Chemical forces exist in nature, and these forces are sufficient to explain the formation of any kind of chemical compound. The problem of the origin of the life substance would then have been simply to account for certain conditions which resulted in such chemical combination as would give rise to this physical basis of life. But now that the simplest substance manifesting the phenomena of life is found to be a machine, we can no longer find in chemical forces efficient causes for its formation. Chemical forces and chemical affinity can explain chemical compounds of any degree of complexity, but they cannot explain the formation of machines. Machines are the result of forces of an entirely different nature. Man can manufacture machines by taking chemical compounds and putting them together into such relations that their interaction will give certain results. Bits of iron and steel, for instance, are put together to form a locomotive, but the action of the locomotive depends, not upon the chemical forces which made the steel, but upon the relation of the bits of steel to each other in the machine. So far as we have had any experience, machines have been built under the guidance of intelligence which adapts the parts to each other. When therefore we find that the simplest life substance is a machine, we are forced to ask what forces exist in nature which can in a similar way build machines by the adjustment of parts to each other. But this topic belongs to the second part of our subject, and must be for the present postponed.

==Reaction against the Cell Doctrine.==--As the knowledge of cells which we have outlined was slowly acquired, the conception of the cell passed through various modifications. At first the cell wall was looked upon as the fundamental part, but this idea soon gave place to the belief that it was the protoplasm that was alive. Under the influence of this thought the cell doctrine developed into something like the following: The cell is simply a bit of protoplasm and is the unit of living matter. The bodies of all larger animals and plants are made up of great numbers of these units acting together, and the activities of the entire organism are simply the sum of the activities of its cells. The organism is thus simply the sum of the cells which compose it, and its activities the sum of the activities of the individual cells. As more facts were disclosed the idea changed slightly. The importance of the nucleus became more and more forcibly impressed upon microscopists, and this body came after a little into such prominence as to hide from view the more familiar protoplasm. The marvellous activities of the nucleus soon caused it to be regarded as the important part of the cell, while all the rest was secondary. The cell was now thought of as a bit of nuclear matter surrounded by secondary parts. The marvellous activities of the nucleus, and above all, the fact that the nucleus alone is handed down from one generation to the next in reproduction, all attested to its great importance and to the secondary importance of the rest of the cell.

This was the most extreme position of the cell doctrine. The cell was the unit of living action, and the higher animal or plant simply a colony of such units. An animal was simply an association together for mutual advantage of independent units, just as a city is an association of independent individuals. The organization of the animals was simply the result of the combination of many independent units. There was no activity of the organism as a whole, but only of its independent parts. Cell life was superior to organized life. Just as, in a city, the city government is a name given to the combined action of the individuals, so are the actions of organisms simply the combined action of their individual cells.

Against such an extreme position there has been in recent years a decided reaction, and to-day it is becoming more and more evident that such a position cannot be maintained. In the first place, it is becoming evident that the cell substance is not to be entirely obliterated by the importance of the nucleus. That the nucleus is a most important vital centre is clear enough, but it is equally clear that nucleus and cell substance must be together to constitute the life substance. The complicated structure of the cell substance, the decided activity shown by its fibres in the process of cell division, clearly enough indicate that it is a part of the cell which can not be neglected in the study of the life substance. Again the discovery of the centrosome as a distinct morphological element has still further added to the complexity of the life substance, and proved that neither nucleus nor cell substance can be regarded as the cell or as constituting life. It is true that we may not yet know the source of this centrosome. We do not know whether it is handed down from generation to generation like the nucleus, or whether it can be made anew out of the cell substance in the life of an ordinary cell. But this is not material to its recognition as an organ of importance in the cell activity. Thus the cell proves itself not to; be a bit of nuclear matter surrounded by secondary parts, but a community of several perhaps equally important interrelated members.

Another series of observations weakened the cell doctrine in an entirely different direction. It had been assumed that the body of the multicellular animal or plant was made of independent units. Microscopists of a few years ago began to suggest that the cells are in reality not separated from each other, but are all connected by protoplasmic fibres. In quite a number of different kinds of tissue it has been determined that fine threads of protoplasmic material lead from one cell to another in such a way that the cells are in vital connection. The claim has been made that there is thus a protoplasmic connection between all the cells of the body of the animal, and that thus the animal or plant, instead of consisting of a large number of separate independent cells, consists of one great mass of living matter which is aggregated into little centres, each commonly holding a nucleus. Such a conclusion is not yet demonstrated, nor is its significance very clear should it prove to be a fact; but it is plain that such suggestions quite decidedly modify the conception of the body as a community of independent cells.

There is yet another line of thought which is weakening this early conception of the cell doctrine. There is a growing conviction that the view of the organism, simply as the sum of the activities of the individual cells, is not a correct understanding of it. According to this extreme position, a living thing can have no organization until it appears as the result of cell multiplication. To take a concrete case, the egg of a starfish can not possess any organization corresponding to the starfish. The egg is a single cell, and the starfish a community of cells. The egg can, therefore, no more contain the organization of a starfish than a hunter in the backwoods can contain within himself the organization of a great metropolis. The descendants of individuals like the hunter may unite to form a city, and the descendants of the egg cell may, by combining, give rise to the starfish. But neither can the man contain within himself the organization of the city, nor the egg that of the starfish. It is, perhaps, true that such an extreme position of the cell doctrine has not been held by any one, but thoughts very closely approximating to this view have been held by the leading advocates of the cell doctrine, and have beyond question been the inspiration of the development of that doctrine.

But certainly no such conception of the significance of cell structure would longer be held. In spite of the fact that the egg is a single cell, it is impossible to avoid the belief that in some way it contains the starfish. We need not, of course, think of it as containing the structure of a starfish, but we are forced to conclude that in some way its structure is such that it contains the starfish potentially. The relation of its parts and the forces therein are such that, when placed under proper conditions, it develops into a starfish. Another egg placed under identical conditions will develop into a sea urchin, and another into an oyster. If these three eggs have the power of developing into three different animals under identical conditions, it is evident that they must have corresponding differences in spite of the fact that each is a single cell. Each must in some way contain its corresponding adult. In other words, the organization must be within the cells, and hence not simply produced by the associations of cells.

Over this subject there has been a deal of puzzling and not a little experimentation. The presence of some sort of organization in the egg is clear--but what is meant by this statement is not quite so clear. Is this adult organization in the whole egg or only in its nucleus, and especially in the chromosomes which, as we have seen, contain the hereditary traits? When the egg begins to divide does each of the first two cells still contain potentially the organization of the whole adult, or only one half of it? Is the development of the egg simply the unfolding of some structure already present; or is the structure constantly developing into more and more complicated conditions owing to the bringing of its parts into new relations? To answer these questions experimenters have been engaged in dividing developing eggs into pieces to determine what powers are still possessed by the fragments. The results of such experiments are as yet rather conflicting, but it is evident enough from them that we can no longer look upon the egg cell as a simple undifferentiated cell. In some way it already contains the characters of the adult, and when we remember that the characters of the adult which are to be developed from the egg are already determined, even to many minute details--such, for instance, as the inheritance of a congenital mark--it becomes evident that the egg is a body of extraordinary complexity. And yet the egg is nothing more than a single cell agreeing with other cells in all its general characters. It is clear, then, that we must look upon organization as something superior to cells and something existing within them, or at least within the egg cell, and controlling its development. We are forced to believe, further, that there may be as important differences between two cells as there are between two adult animals or plants. In some way there must be concealed within the two cells which constitute the egg of the starfish and the man differences which correspond to the differences between the starfish and the man. Organization, in other words, is superior to cell structure, and the cell itself is an organization of smaller units.

As the result of these various considerations there has been, in recent years, something of a reaction against the cell doctrine as formerly held. While the study of cells is still regarded as the key to the interpretation of life phenomena, biologists are seeing more and more clearly that they must look deeper than simple cell structure for their explanation of the life processes. While the study of cells has thrown an immense amount of light upon life, we seem hardly nearer the centre of the problem than we were before the beginning of the series of discoveries inaugurated by the formulation of the doctrine of protoplasm.

==Fundamental Vital Activities as Located in Cells.==--We are now in position to ask whether our knowledge of cells has aided us in finding an explanation of the fundamental vital actions to which, as we have seen, life processes are to be reduced. The four properties of irritability, contractibility, assimilation, and reproduction, belong to these vital units--the cells, and it is these properties which we are trying to trace to their source as a foundation of vital activity.

We may first ask whether we have any facts which indicate that any special parts of the cell are associated with any of these fundamental activities. The first fact that stands out clearly is that the nucleus is connected most intimately with the process of reproduction and especially with heredity. This has long been believed, but has now been clearly demonstrated by the experiments of cutting into fragments the cell bodies of unicellular animals. As already noticed, those pieces which possess a nucleus are able to continue their life and reproduce themselves, while those without a nucleus are incapable of reproduction. With greater force still is the fact shown by the process of fertilization of the egg. The egg is very large and the male reproductive cell is very small, and the amount of material which the offspring derives from its mother is very great compared with that which it derives from its father. But the child inherits equally from father and mother, and hence we must find the hereditary traits handed down in some element which the offspring obtains equally from father and mother. As we have seen (Figs. 34-44), the only element which answers this demand is the nucleus, and more particularly the chromosomes of the nucleus. Clearly enough, then, we must look upon the nucleus as the special agent in reproduction of cells.